species:   Rhsol
pid:       PID0625
parent:    Rhi-milR-17
paralog:   
locus:     KB317786.1:6990-7102
matures:   ['AGACUAAGGCUCAGAUAAUUGCG', 'UUUGCAACCUGAGACCCAGGUUUCU']
srr:       SRR1994874
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram KB317786.1:6990-7102

33 out of bounds
44 alignments
36 proper strand
23 stranded perfect matches

                 **************************                                     ****************************     
GCUCAAUACACUAGCCCCAAGACUAAGGCUCAGAUAAUUGCGCUGAAAAAGCUCAAAUACUCAGAUUGGGCUGUUGUUCAGCUUUUGCAACCUGAGACCCAGGUUUCUCAUGC
...................(((((..(((((((....((((((((((..(((((((.........)))))))....))))))....)))).))))).))..))))).......
-------------------AGACUAAGGCUCAGAUAAUUGCG----------------------------------------------------------------------- l=23 a=0 c
-----------------------------------------------------------------------------------UUUGCAACCUGAGACCCAGGUUUCU----- l=25 a=0 c*
-------------------AGACUAAGGCUCAGAUAAUUGCGC---------------------------------------------------------------------- l=24 a=5 ma
----------------------------------------------------------------------------------UUUUGCAACCUGAGACCCAGGUUUCU----- l=26 a=0 ma*

---------------------------------------------------------UACUCAGAUUGGGCUGUUGc------------------------------------ l=20 a=1 
----------------------------------------------------UCAAAUACUCAGAUUGGGCUGUUG------------------------------------- l=24 a=2 
---------------------------------------------AAAAAGCUCAAAUACUCAGAUcGGG------------------------------------------- l=25 a=1 
---------------------ACUAAGGCUCAGAUAAUUGCGC---------------------------------------------------------------------- l=22 a=2 
-------------------AGACUAAGGCUCAGAUAAUUGC------------------------------------------------------------------------ l=22 a=3 
-------------------AGACUAAGGCUCAGAUAAUUGCu----------------------------------------------------------------------- l=23 a=1 
-------------------AGACUAAGGCUCAGAUAAUUGCGC---------------------------------------------------------------------- l=24 a=5 (ma)
-------------------AGACUcAGGCUCAGAUAAUUGCGC---------------------------------------------------------------------- l=24 a=1 
-------------------AGACUAAGGCUCAGAUAAUUGCGu---------------------------------------------------------------------- l=24 a=1 
------------------AAGACUAAGGCUCAGAUAAUUGC------------------------------------------------------------------------ l=23 a=2 
------------------AAGACUAAGGCUCAGAUAAUUGCG----------------------------------------------------------------------- l=24 a=4 
------------------AAGACUAAGGCUCAGAUAAUUGCa----------------------------------------------------------------------- l=24 a=6 
------------------AAGACUAAGGCUCAGAUAAUUGCu----------------------------------------------------------------------- l=24 a=2 
------------------AAGACUAAGGCUCAGAUAAUUGCGC---------------------------------------------------------------------- l=25 a=5 

mb-00011
ax-1001011
ku-01
ss-111111101100
fn-111
